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Commits on Dec 14, 2022

• Update inspecting examples colab.

  

  anastasiyabl

  authored and

  Copybara-Service

  committedDec 14, 2022
  24ef0f0

• Fix warnings.

  

  anastasiyabl

  authored and

  Copybara-Service

  committedDec 14, 2022
  6b6243c

• Bump remaining version numbers.

  

  anastasiyabl

  authored and

  Copybara-Service

  committedDec 14, 2022
  32049b2

• Update Runtime metrics page.

  

  anastasiyabl

  authored and

  Copybara-Service

  committedDec 14, 2022
  5dd53fc

Commits on Dec 13, 2022

• Update version numbers for v1.1.

  

  anastasiyabl

  authored and

  Copybara-Service

  committedDec 13, 2022
  63d7e03

• Update the path to public training examples in TPU tutorial.

  

  akolesnikov

  authored and

  Copybara-Service

  committedDec 13, 2022
  7bbdcf1

Commits on Dec 12, 2022

• Update Yield metrics page for v1.1.

  

  anastasiyabl

  authored and

  Copybara-Service

  committedDec 12, 2022
  afb42ef

• Update assembly metrics for v1.1.

  

  anastasiyabl

  authored and

  Copybara-Service

  committedDec 12, 2022
  4d50602

Commits on Dec 8, 2022

• Update the config with values used in v1.1.

  

  anastasiyabl

  authored and

  Copybara-Service

  committedDec 8, 2022
  35d295b

Commits on Dec 1, 2022

• Update TPU training tutorial with commands for persistent disk setup using a small VM.

  

  akolesnikov

  authored and

  Copybara-Service

  committedDec 1, 2022
  4cd7995

Commits on Nov 28, 2022

• Update version number for pip install. NOTE: In the future, we should remember to update README_pip.md before we push to PyPI.

  

  pichuan

  authored and

  Copybara-Service

  committedNov 28, 2022
  9864a27

• Add a tutorial for training DeepConsensus model on a Cloud TPU VM.

  

  pichuan

  authored and

  Copybara-Service

  committedNov 28, 2022
  34a1b80

Commits on Nov 21, 2022

• Update quick start info using v1.0.0 Docker image.

  

  pichuan

  authored and

  Copybara-Service

  committedNov 21, 2022
  63b5a26

• Pin everything. This is to address the pip install issue in #48 mentioned by @mjg0.

  

  pichuan

  authored and

  Copybara-Service

  committedNov 21, 2022
  be308d0

Commits on Nov 18, 2022

• Resolving for #48 (comment).

  

  pichuan

  authored and

  Copybara-Service

  committedNov 18, 2022
  598adda

Commits on Nov 14, 2022

• Optional partition by PacBio smart windows

  

  akolesnikov

  authored and

  Copybara-Service

  committedNov 14, 2022
  d1fc534

Commits on Nov 2, 2022

• Restore from latest checkpoint instead of the checkpoint at epoch beginning.

  

  anastasiyabl

  authored and

  Copybara-Service

  committedNov 2, 2022
  71f88dd

Commits on Oct 23, 2022

• Mask-based local sliding window attention.

  

  Genomics team in Google Health

  authored and

  Copybara-Service

  committedOct 23, 2022
  b8dfd6a

Commits on Oct 13, 2022

• Update params to match the chosen model for DC 1.0 release.

  

  anastasiyabl

  authored and

  Copybara-Service

  committedOct 13, 2022
  16d2762

Commits on Oct 11, 2022

• Output counters in inference mode.

  

  akolesnikov

  authored and

  Copybara-Service

  committedOct 11, 2022
  4662140

Commits on Oct 6, 2022

• Modify requirements

  

  danielecook

  authored and

  Copybara-Service

  committedOct 6, 2022
  e0e6d28

• Update training tutorial.

  

  pichuan

  authored and

  Copybara-Service

  committedOct 6, 2022
  f14b86d

• Update inspecting examples colab.

  

  danielecook

  authored and

  Copybara-Service

  committedOct 6, 2022
  fb9dd7e

• Fix typo.

  

  pichuan

  authored and

  Copybara-Service

  committedOct 6, 2022
  2769946

Commits on Oct 5, 2022

• Corrections to make examples tutorial.

  

  akolesnikov

  authored and

  Copybara-Service

  committedOct 5, 2022
  e03572c

• Update assembly metrics for v1.0

  

  danielecook

  authored and

  Copybara-Service

  committedOct 5, 2022
  07160e8

Commits on Oct 4, 2022

• Update Quickstart.

  

  danielecook

  authored and

  Copybara-Service

  committedOct 4, 2022
  5eb0941

• Restructure calibrate lib for better re-use. Add --dc_calibrate flag.

  

  danielecook

  authored and

  Copybara-Service

  committedOct 4, 2022
  c3eda54

• Fix attention layer init.

  

  Genomics team in Google Health

  authored and

  Copybara-Service

  committedOct 4, 2022
  a66e3a1

Commits on Sep 30, 2022

• Update Yield metrics page for v1.0.

  

  danielecook

  authored and

  Copybara-Service

  committedSep 30, 2022
  73ec318

• Update Runtime metrics page.

  

  danielecook

  authored and

  Copybara-Service

  committedSep 30, 2022
  dacaef8

• Update to Python 3.9

  

  danielecook

  authored and

  Copybara-Service

  committedSep 30, 2022
  854b5bf

Commits on Sep 29, 2022

• Small fix (adding an end ").

  

  pichuan

  authored and

  Copybara-Service

  committedSep 29, 2022
  179a4c3

• DeepConsensus model training tutorial

  

  akolesnikov

  authored and

  Copybara-Service

  committedSep 29, 2022
  dfcdbdc

Commits on Sep 28, 2022

• Update tensorflow to 2.10

  

  kishwarshafin

  authored and

  Copybara-Service

  committedSep 28, 2022
  54fc743

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