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Issues list

Samtools and bcftools are missing from bioconda environment enhancement New feature or request
#45 by simozacca was closed Feb 27, 2021
2
Demoes/Examples are pointing to the wrong python exec in bioconda env invalid This doesn't seem right
#44 by simozacca was closed Feb 26, 2021
1
Bioconda version does not support SNPCaller bug Something isn't working
#43 by simozacca was closed Feb 26, 2021
1
Update complete demo invalid This doesn't seem right
#42 by simozacca was closed May 11, 2021
@vineetbansal
2
Specified normal BAM file does not exist / XDIR question!
#40 by rgold97 was closed Feb 22, 2021
1
Update command for number of CPUs for Python3 bug Something isn't working
#37 by simozacca was closed Feb 19, 2021
1
Issues with Installation Question
#32 by rgold97 was closed Feb 10, 2021
1
Interpretation of results and integration with SNVs
#31 by karini925 was closed Jan 19, 2021
3
cluBB bnpy version issue
#29 by karini925 was closed Jan 15, 2021
5
docker or conda version of hatchet
#27 by worker000000 was closed Dec 7, 2020
1
binBam error
#26 by ghost was closed Nov 28, 2020
1
deal with primary/met tumor-only samples
#25 by qindan2008 was closed Jan 15, 2021
4
Library nomalization
#20 by chaos66ren was closed Oct 16, 2020
1
help for result interpretation
#18 by SebastianHollizeck was closed Oct 22, 2020
11
solve steps fails with GRBException
#16 by SebastianHollizeck was closed Oct 1, 2020
7
installation requires specific versions (which are no specified)
#15 by SebastianHollizeck was closed Oct 13, 2020
11
Reference Index File Name
#14 by pkMyt1 was closed Sep 18, 2020
4
ArgParsing Bug
#13 by pkMyt1 was closed Sep 28, 2020
2
Python 3 support???
#12 by pkMyt1 was closed Sep 17, 2020
2
Color Palette Issue
#11 by mkinnaman was closed Dec 7, 2020
2
Question about bin start-end used for samtools invocation
#9 by vineetbansal was closed Feb 11, 2021
Could the outcome from HATCHet link to MACHINA?
#8 by biosurgeon was closed Jul 8, 2020
1
The regions provided for chromosome are non-disjoint or a region start is greater than corresponding region end
#7 by proteinosome was closed Jul 8, 2020
6
Are non-human reference genomes supported?
#6 by programmingprincess was closed Jul 8, 2020
10
Sex chromosomes with labels 'chrX' and 'chrY' not reported
#5 by nalcala was closed Jul 8, 2020
5
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