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Issues list

deal with primary/met tumor-only samples
#25 by qindan2008 was closed Jan 15, 2021 updated Jul 28, 2024
4
Reference panel requirement
#221 by willhooper was closed Jun 13, 2024 updated Jun 13, 2024
1
String "None" is not converted to Python None object in parse_combine_counts_args
#208 by tyamaguchi-ucla was closed May 2, 2024 updated May 2, 2024
1
AssertionError at clustering step
#216 by willhooper was closed Apr 18, 2024 updated Apr 18, 2024
1
Issue encountered in demo for the entire HATCHet pipeline
#153 by gurbaaz27 was closed Feb 16, 2024 updated Feb 16, 2024
2
Failed to parse the output of the following command because the final objective was not found: {cmd}
#193 by ronkesm was closed Sep 20, 2023 updated Sep 20, 2023
2
submitted in error
#178 by mdiaz09 was closed Dec 14, 2022 updated Dec 14, 2022
Sex chromosomes with labels 'chrX' and 'chrY' not reported
#5 by nalcala was closed Jul 8, 2020 updated Nov 22, 2022
5
Gurobi solver: buffer overflow
#116 by jbedo was closed May 3, 2022 updated Oct 28, 2022
5
Performance
#104 by kristianunger was closed Nov 11, 2021 updated Oct 27, 2022
6
not support "run"
#172 by gbnci was closed Oct 27, 2022 updated Oct 27, 2022
None potential neutral cluster found with given parameters! enhancement New feature or request
#49 by ahgillmo was closed Apr 7, 2021 updated Oct 17, 2022
@vineetbansal @mmyers1
7
bulk.seg
#168 by miachom was closed Oct 11, 2022 updated Oct 11, 2022
Building docker image on m1 macs
#167 by shashkat was closed Oct 11, 2022 updated Oct 11, 2022
Error using --chromosomes argument
#163 by wir963 was closed Sep 15, 2022 updated Sep 15, 2022
4
Hg38 not recognized
#120 by mdiaz09 was closed Jul 19, 2022 updated Jul 19, 2022
8
Add checks for samtools/bcftools/bgzip
#130 by vineetbansal was closed Jul 4, 2022 updated Jul 4, 2022
@vineetbansal
1
WXS demo doc
#98 by tyamaguchi-ucla was closed Jun 29, 2022 updated Jun 29, 2022
@mmyers1 @brian-arnold
2
Is this correct?
#131 by vineetbansal was closed Jun 29, 2022 updated Jun 29, 2022
2
Code that will crash in certain circumstances
#128 by vineetbansal was closed Jun 29, 2022 updated Jun 29, 2022
1
Possible bug?
#121 by vineetbansal was closed May 9, 2022 updated May 9, 2022
@mmyers1
1
GATK custom pipeline error in gatk4cnsToBB.py
#112 by asangphukieo was closed Feb 20, 2022 updated Feb 20, 2022
3
[Errno 2] No such file or directory
#117 by mdiaz09 was closed Feb 18, 2022 updated Feb 18, 2022
3
clusters are not separated
#114 by asangphukieo was closed Jan 26, 2022 updated Jan 26, 2022
3
GC correction
#115 by wir963 was closed Jan 26, 2022 updated Jan 26, 2022
1
ProTip! Exclude everything labeled bug with -label:bug.