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Issues list

Reference panel requirement
#221 by willhooper was closed Jun 13, 2024
1
AssertionError at clustering step
#216 by willhooper was closed Apr 18, 2024
1
String "None" is not converted to Python None object in parse_combine_counts_args
#208 by tyamaguchi-ucla was closed May 2, 2024
1
Failed to parse the output of the following command because the final objective was not found: {cmd}
#193 by ronkesm was closed Sep 20, 2023
2
submitted in error
#178 by mdiaz09 was closed Dec 14, 2022
not support "run"
#172 by gbnci was closed Oct 27, 2022
bulk.seg
#168 by miachom was closed Oct 11, 2022
Building docker image on m1 macs
#167 by shashkat was closed Oct 11, 2022
Error using --chromosomes argument
#163 by wir963 was closed Sep 15, 2022
4
Issue encountered in demo for the entire HATCHet pipeline
#153 by gurbaaz27 was closed Feb 16, 2024
2
Is this correct?
#131 by vineetbansal was closed Jun 29, 2022
2
Add checks for samtools/bcftools/bgzip
#130 by vineetbansal was closed Jul 4, 2022
@vineetbansal
1
Code that will crash in certain circumstances
#128 by vineetbansal was closed Jun 29, 2022
1
Possible bug?
#121 by vineetbansal was closed May 9, 2022
@mmyers1
1
Hg38 not recognized
#120 by mdiaz09 was closed Jul 19, 2022
8
[Errno 2] No such file or directory
#117 by mdiaz09 was closed Feb 18, 2022
3
Gurobi solver: buffer overflow
#116 by jbedo was closed May 3, 2022
5
GC correction
#115 by wir963 was closed Jan 26, 2022
1
clusters are not separated
#114 by asangphukieo was closed Jan 26, 2022
3
KeyError in count_alleles
#113 by wir963 was closed Jan 26, 2022
6
GATK custom pipeline error in gatk4cnsToBB.py
#112 by asangphukieo was closed Feb 20, 2022
3
infinite time when running cluster-bins
#110 by xxzzwan was closed Oct 29, 2021
4
Detecting exact CNA breakpoints
#109 by prateek-anand was closed Oct 28, 2021
1
Key Error: Size when executing hatchet
#105 by AndrewWebster10 was closed Oct 1, 2021
3
Performance
#104 by kristianunger was closed Nov 11, 2021
6
ProTip! Exclude everything labeled bug with -label:bug.