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97 Open 1,618 Closed
97 Open 1,618 Closed
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Issues list

KP.3.3 + S:P1162L(6 seq, 3 countries)
#1715 opened Jul 9, 2024 by DoropFan
JN.1.4+ S:R346T & S:S31del emerged in Guatemala (11 samples, 35% local prevalence in May) DelRT S:S31-+S:R346T Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest High local prevalence Lineage that apparently gained high prevalence in one country or region
#1714 opened Jul 7, 2024 by DailyCovidCases
1
JN.1.16+Orf1a:V1880I+S:A684T(32 seqs, 2 countries) S:456 S:684 Small clusters ?? This label identifies lineages with very few sequences,allowing to track them for a couple of weeks
#1712 opened Jul 7, 2024 by aviczhl2
KP.3.2+Orf1a:K2004R,Orf1b:T2537I, S:K304N(8 seqs, 2 countries) KP.3 S:304
#1711 opened Jul 7, 2024 by aviczhl2
KP.3.3+S:R765L(25 seqs, 3 countries) KP.3 S:765
#1710 opened Jul 7, 2024 by aviczhl2
KP.3.1+S:L84I(17 seqs, 6 countries) KP.3 S:84
#1709 opened Jul 7, 2024 by aviczhl2
1
KP.3.1+Orf1a:A537S,M1769T,S:R237M(15 seqs, 5 countries) KP.3 S:237
#1708 opened Jul 7, 2024 by aviczhl2
KP.3.1.1+S:A845S(9 seqs, 5 countries) DeFLuQE S:S31-+S:F456L+S:Q493E KP.3 S:845
#1707 opened Jul 7, 2024 by aviczhl2
1
XDV.1+Orf1a:K4377R,S:R346T(4 seqs, 2 countries) FLiRT FLiRT is an Acronym for S:R346T + S:F456L XDV
#1706 opened Jul 7, 2024 by aviczhl2
5
KP.3.2.3 with ORF1a:A1508V (nsp3_A690V), S:T286I and S:P793T (10 seqs, Canada) KP.3 s:286 s:793
#1704 opened Jul 6, 2024 by NkRMnZr
KR.1 got S:186-189del resulting in S:R190W ( S:F186W plu S:187-190del for Gisaid) (11 seqs, 5 states, 3 continents) Deletions/Truncations/Frameshifted Lineage showing any deletions or stop codons or TRS changes. FLiRT FLiRT is an Acronym for S:R346T + S:F456L S:186 S:190
#1703 opened Jul 6, 2024 by FedeGueli
JN.1.16 got S:Q493E ( 2 GBW samples, 1 patient, Taiwan) after triple nuc mutation Orf7a:F59K S:31 S:456 S:493 Triple Nucleotides mutations
#1702 opened Jul 6, 2024 by FedeGueli
@ryhisner
2
XDV.1 got S:Q52R (5) S:52 S:456 XDV
#1701 opened Jul 6, 2024 by FedeGueli
Other KP.3 sublineages with S:S31del KP.3 Multiple lineages Rapid review needed S:31del
#1700 opened Jul 5, 2024 by JosetteSchoenma
1
KP.2 Plus S:I934V and S:N30K emerged in China (7) KP.2 PLPro S:30 S:934
#1699 opened Jul 5, 2024 by FedeGueli
KP.1.1.1 became DeFLiRT starting with N:S183P (5 California, China) DeFlirt S:S31-+S:R346T+S:F456L KP.1.1.1
#1698 opened Jul 5, 2024 by FedeGueli
KP.3.1.4 plus S:G184A (8, 4 countries including China) KP.3 S:184
#1697 opened Jul 5, 2024 by FedeGueli
KP.3.1.4 plus S:Q52R ( 18, 3-4% in Israel after June 10) High local prevalence Lineage that apparently gained high prevalence in one country or region KP.3 Rapid review needed S:11 S:52 S:681
#1696 opened Jul 4, 2024 by FedeGueli
1
Recent KP.3.1.1 + S:A397V 6 sequences , 5 countries DeFLuQE S:S31-+S:F456L+S:Q493E KP.3 S:397
#1695 opened Jul 4, 2024 by FedeGueli
4
JN.1.48.2+S:R346T with Orf1a:A427V (28 seqs, 4 countries) Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. DelRT S:S31-+S:R346T
#1694 opened Jul 4, 2024 by DailyCovidCases
KP.2+S:S31del with C9286T branch (44 seqs, 6 countries) DeFlirt S:S31-+S:R346T+S:F456L KP.2 Rapid review needed
#1693 opened Jul 4, 2024 by DailyCovidCases
1
JN.1.42.2 plus S:S31del and Orf1a:E940G (35 , Central America - 40% of samples related to El Salvador after June 1) Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest S:31 S:346
#1692 opened Jul 4, 2024 by FedeGueli
MD.3.1+S:S31F(9 seqs, 4 countries) FLiRT FLiRT is an Acronym for S:R346T + S:F456L S:31
#1691 opened Jul 4, 2024 by aviczhl2
1
LA.1+Orf1a:P309S,A967V,S:I1225V(5 seqs, 3 countries) FLiRT FLiRT is an Acronym for S:R346T + S:F456L s:1225
#1690 opened Jul 4, 2024 by aviczhl2
KS.1+Orf1a:L2367S, S:A263V(5 seqs, 2 countries) KS.1 S:263
#1689 opened Jul 4, 2024 by aviczhl2
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