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Issues: scverse/scanpy

Rename master -> main
#2869 by ivirshup was closed Feb 23, 2024
Closed 4
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Issues list

cluster cells within groups when plotting with scanpy.pl.heatmap() Enhancement ✨ Triage 🩺 This issue needs to be triaged by a maintainer
#3129 opened Jun 28, 2024 by zsfrbkv updated Jun 28, 2024
Fix all the various test failures
#3124 opened Jun 25, 2024 by flying-sheep updated Jun 27, 2024
2 of 4 tasks
1.10.3
Adata.raw gets modified upon log normalization of adata Bug 🐛
#3073 opened May 22, 2024 by AlejandraRodelaRo updated Jun 26, 2024
2 of 3 tasks
@flying-sheep
7
elem_mul in variance calculation should use float64 casting Bug 🐛 Triage 🩺 This issue needs to be triaged by a maintainer
#3127 opened Jun 26, 2024 by ilan-gold updated Jun 26, 2024
3 tasks done
1.11.0
Can't read in protein antibody capture data Bug 🐛 Triage 🩺 This issue needs to be triaged by a maintainer
#3113 opened Jun 18, 2024 by alexanderchang1 updated Jun 25, 2024
3 tasks done
Unable to run Scrublet in v1.10 Bug 🐛
#3116 opened Jun 21, 2024 by jasonleongbio updated Jun 25, 2024
2 of 3 tasks
3
Rasterisation/vector_friendly not always working
#2005 opened Sep 22, 2021 by Hrovatin updated Jun 25, 2024
1 of 3 tasks
5
Numpy 2 support (unpin) Enhancement ✨
#3114 opened Jun 20, 2024 by flying-sheep updated Jun 25, 2024 1.10.3
1
@flying-sheep
Benchmarks: Add all from Dask tutorial benchmark
#3013 opened Apr 18, 2024 by flying-sheep updated Jun 25, 2024 1.10.3
@flying-sheep
DotPlot .style() resets previous value assignments Bug 🐛
#1633 opened Feb 9, 2021 by fidelram updated Jun 25, 2024 1.10.3
1
sc.tl.dendrogram doesn't use var_names Bug 🐛
#1549 opened Dec 17, 2020 by Fougere87 updated Jun 25, 2024
2 of 3 tasks
1.10.3
3
3
New UMAP distances like ll_dirichlet and hellinger throw exception with small AnnDatas Area - Topology 🍩 Neighbor graphs Bug 🐛 Help Wanted
#1011 opened Jan 27, 2020 by gokceneraslan updated Jun 25, 2024 1.10.3
1
1
rank genes groups errors on less than 2 cells in a category Enhancement ✨ Triage 🩺 This issue needs to be triaged by a maintainer
#3118 opened Jun 22, 2024 by MishalAshraf updated Jun 22, 2024
FindConservedMarkers implementaion in Scanpy Enhancement ✨ Triage 🩺 This issue needs to be triaged by a maintainer
#3117 opened Jun 22, 2024 by SNOL2 updated Jun 22, 2024
Shuffled gene names for differential expression Bug 🐛 Triage 🩺 This issue needs to be triaged by a maintainer
#3106 opened Jun 13, 2024 by smithcathy updated Jun 13, 2024
2 of 3 tasks
highly_variable_genes with batch_key results in a "division by zero" error, if there is a batch with a single sample Bug 🐛 Triage 🩺 This issue needs to be triaged by a maintainer
#3103 opened Jun 9, 2024 by YochayTzur updated Jun 9, 2024
2 of 3 tasks
unexpected error in sc.pl.dpt_timeseries and dpt_groups_pseudotime Bug 🐛 Needs info❔ More information needed
#3086 opened Jun 2, 2024 by FessenSimon updated Jun 8, 2024
2 of 3 tasks
2
sc.get.aggregate summary statistics Enhancement ✨
#3063 opened May 16, 2024 by grst updated Jun 7, 2024
2
Dotplot / Matrixplot Bug/Suggestion [Key Error] Because "var_group_labels" & "categories_order" using the same variable (memory), mostly happened when "swap_axes=True" Bug 🐛 Needs info❔ More information needed
#3081 opened May 31, 2024 by WhatMelonGua updated Jun 7, 2024
3 tasks done
1
Error in running scrublet Bug 🐛 Needs info❔ More information needed
#3070 opened May 20, 2024 by dicklim updated Jun 7, 2024
2 of 3 tasks
1
Broken Scrublet Test Bug 🐛
#3068 opened May 17, 2024 by ilan-gold updated Jun 7, 2024
3 tasks done
1
@ilan-gold
Score genes - control genes index of wrong format
#2153 opened Feb 23, 2022 by Hrovatin updated Jun 6, 2024
1 of 3 tasks
1
@flying-sheep
4
key_added to UMAP, tSNE, PCA Area – API API design Enhancement ✨
#1861 opened May 27, 2021 by adamgayoso updated Jun 3, 2024
1 of 5 tasks
1.11.0
@flying-sheep
6
Performance improvements for Regress Out Enhancement ✨
#2781 opened Dec 17, 2023 by dsm-72 updated Jun 3, 2024
@Intron7
4
densmap Enhancement ✨
#1619 opened Feb 2, 2021 by ivirshup updated May 31, 2024
1
9
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