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Issues: scverse/scanpy

Rename master -> main
#2869 by ivirshup was closed Feb 23, 2024
Closed 4
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Issues list

Neighbors: _connected_components is only set for sparse data
#190 opened Jul 5, 2018 by flying-sheep
Rethink group IDs in rank_genes_groups
#61 opened Jan 3, 2018 by flying-sheep
2
gene co-expression networks
#72 opened Jan 23, 2018 by seth-ament
18
Feature suggestion - implementing joyplots/ridgeplots Enhancement ✨
#84 opened Feb 11, 2018 by jcamunas
1
Investigate if we can do without networkx Enhancement ✨
#97 opened Mar 3, 2018 by flying-sheep
11
Best practice for handling replicates and associated statistics
#106 opened Mar 16, 2018 by dolleyj
3
aga_compare_paths: KeyError: 'aga_groups' and KeyError: 'aga_groups_order_original'
#110 opened Mar 26, 2018 by mjgomezv
1
Set multiple roots in tree layout
#128 opened Apr 20, 2018 by veghp
sc.pl.dpt error if n_branchings=0 in sc.tl.dpt
#129 opened Apr 24, 2018 by davidsebfischer
1
Issue with sanitize_anndata() in plotting functions with subsets of anndata objects are passed. Area - Plotting 🌺 Bug 🐛
#166 opened Jun 1, 2018 by LuckyMD
6
sc.pp.filter_genes_dispersion() produces NaNs
#172 opened Jun 11, 2018 by LuckyMD
4
cluster average expression
#181 opened Jun 22, 2018 by wangjiawen2013
10
Scanpy does not work with with few permissions
#50 opened Nov 22, 2017 by ChristianSauer
10
Imputation methods
#189 opened Jul 3, 2018 by wflynny
6
Interactive scatter plots Enhancement ✨
#253 opened Sep 3, 2018 by falexwolf
4
PCA, "RuntimeWarning: divide by zero encountered in log" and wrong PCs ordering with svd_solver arpack Bug 🐛
#264 opened Sep 20, 2018 by fbrundu
3
Request: add PR-AUC metric
#269 opened Sep 26, 2018 by tantrev
1
sc.pl.paga_path: n_avg>1 messes up legend
#274 opened Sep 28, 2018 by fbnrst
1
Function plot_scatter is breaking with matplotlib
#286 opened Oct 8, 2018 by dilawar
17
How to score cluster for presence of marker genes?
#290 opened Oct 9, 2018 by fidelram
6
Notebooks on readthedocs Area - Documentation 📒 Enhancement ✨
#302 opened Oct 15, 2018 by Koncopd
@Koncopd
8
UMAP ignores n_components when initial position is paga Enhancement ✨
#306 opened Oct 16, 2018 by Marius1311
2
Bugs with pypairs functions
#310 opened Oct 18, 2018 by bebatut
2
sc.pl.stacked_violin: issue using imported adata Bug 🐛
#318 opened Oct 22, 2018 by bebatut
4
cluster cells within groups when plotting with scanpy.pl.heatmap() Enhancement ✨ Triage 🩺 This issue needs to be triaged by a maintainer
#3129 opened Jun 28, 2024 by zsfrbkv
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