[go: nahoru, domu]
Skip to content

Issues: scverse/scanpy

Rename master -> main
#2869 by ivirshup was closed Feb 23, 2024
Closed 4
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
504 Open 1,198 Closed
504 Open 1,198 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Any interest in getting SCTransform up on Scanpy? Enhancement ✨
#1643 opened Feb 10, 2021 by atarashansky
1 of 5 tasks
27
Interest in HTO/ADT demultiplexing and analysis? Area – External Dealing with external tools
#351 opened Nov 8, 2018 by wflynny
24
Additional parameters in some functions - new functions
#460 opened Feb 4, 2019 by andrea-tango
1
23
counts_per_cell has no effect on pp.normalize_per_cell(adata)
#429 opened Jan 15, 2019 by VolkerBergen
23
leiden and umap not reproducible on different CPUs Area - Documentation 📒 Area – Reproducibility Exact replication Enhancement ✨
#2014 opened Oct 15, 2021 by grst
2 of 3 tasks
1.11.0
21
Dotplot where sizes are proportional to p-value and the color to log2-fold change? Area - Plotting 🌺 Area – Differential Expression Differential expression Enhancement ✨
#562 opened Mar 26, 2019 by falexwolf
21
leiden alg with igraph flavor causes out of bounds freezing Bug 🐛
#2969 opened Mar 28, 2024 by RubenVanEsch
3 tasks done
1
@ilan-gold
19
Generate BioContainer images Area – External Dealing with external tools Enhancement ✨ Installation
#2281 opened Jun 20, 2022 by Zethson
19
Returning cluster assignments as str conflicts with matplotlib color sequences Question
#1030 opened Feb 5, 2020 by dburkhardt
19
Jackstraw implementation in scanpy? Enhancement ✨
#872 opened Oct 15, 2019 by prabhakaranm
18
Scanpy Clustering
#670 opened May 30, 2019 by Khalid-Usman
18
gene co-expression networks
#72 opened Jan 23, 2018 by seth-ament
18
Spin off read/write into it's own package? Question
#1387 opened Aug 21, 2020 by adamgayoso 1.11.0
17
Use graph coloring algorithm for a “world map” avoiding to color neighboring clusters in the same color Area - Plotting 🌺 Enhancement ✨
#1366 opened Aug 12, 2020 by brianpenghe
17
Function plot_scatter is breaking with matplotlib
#286 opened Oct 8, 2018 by dilawar
17
LoweringError: Failed in nopython mode pipeline (step: nopython mode backend)
#1756 opened Mar 22, 2021 by 117999
16
LLVM ERROR: Symbol not found: __svml_sqrtf8 Bug 🐛 Needs info❔ More information needed
#1696 opened Mar 1, 2021 by TiongSun
16
n_counts not found?
#728 opened Jul 4, 2019 by maximilianh
@ivirshup
16
UMAP is unreproducible between 3 Windows PCs Area – Reproducibility Exact replication Needs info❔ More information needed
#2114 opened Jan 19, 2022 by hyjforesight
14
diffxpy integration Area – Differential Expression Differential expression
#1955 opened Jul 22, 2021 by pinin4fjords
3 of 5 tasks
14
Introduce GLM-PCA to scanpy.external Enhancement ✨
#868 opened Oct 10, 2019 by flying-sheep
14
Reading 10x scRNA-seq with read_10x_mtx() Bug 🐛 Needs info❔ More information needed
#1916 opened Jul 4, 2021 by areejalsaafin
13
Investigate Dask for speeding up Zheng17 Enhancement ✨
#921 opened Nov 14, 2019 by tomwhite
13
Improve documentation for violin plot to illustrate per-gene usage – violin(adata.T, 'gene_property') Area - Documentation 📒 Enhancement ✨
#375 opened Nov 21, 2018 by LuckyMD
13
subsetting isn't working after updating scanpy
#363 opened Nov 15, 2018 by aopisco
13
ProTip! What’s not been updated in a month: updated:<2024-06-01.