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Chongqing Medical University, China
- Visiting in Cambridge, UK
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15:30
(UTC +01:00) - http://shenwei.me
- @shenwei356
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Language: Nim
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Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness,…
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
The HPC toolbox: fused matrix multiplication, convolution, data-parallel strided tensor primitives, OpenMP facilities, SIMD, JIT Assembler, CPU detection, state-of-the-art vectorized BLAS for float…
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
nim wrapper for htslib for parsing genomics data files
seqcover allows users to view coverage for hundreds of genes and dozens of samples
useful command-line tools written to showcase hts-nim
simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
Language benchmarks that are important for Bioinformatics scripting