Antimicrobial Resistance Identification By Assembly

Chinese character stroke order animations and practice quizzes

Reference implementations of minimizer schemes to go with the mod-minimizers paper.

Iterate over minimizers of a DNA sequence

Top-k Approximate String Matching.

A Stream VByte implementation in Go leveraging SIMD techniques

Fast, SIMD-accelerated, multi-set seeding algorithm for error-prone sequences

hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

What should perfect bioinformatic tools be like?

Optimal distance lower bound k-mer sampling.

TopN collector

Ordered map

A command-line tool to batch rename files and directories

Wavefront alignment algorithm (WFA) in Golang

Robust individual and aggregate checksums for nucleotide sequences

MEMO: MEM-based pangenome indexing for k-mer queries

LMS algorithm for computing edit distance with SIMD optimizations

A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring

Rust reimplementation of pp-sketchlib

Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)

Brisk Reduced Index for Sequence of K-mers

SGPT is a command-line tool that provides a convenient way to interact with OpenAI models, enabling users to run queries, generate shell commands and produce code directly from the terminal.

Explore microbial contamination in human whole-genome shotgun data sets, using sourmash

Logan Unitigs and Contigs

Minimum Bait Cover Toolkit Syotti.

Phage Annotation using Protein Structures