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31 results for forked starred repositories
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Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on a laptop within a few hours.

Python 9 Updated May 22, 2024

HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately as…

C++ 7 1 Updated Nov 14, 2023

Needleman-Wunsch Alignment in Go

Go 1 Updated Nov 9, 2020

Assessing and Improving the quality of metagenomic assemblies

Python 27 4 Updated Feb 21, 2022

hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.

C++ 59 8 Updated Oct 20, 2023

Coral, a friendly Cobra fork with nearly all its features, but only 4 dependencies

Go 424 6 Updated Mar 20, 2023

A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies

Perl 28 7 Updated Jun 9, 2023

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:

Perl 23 6 Updated Jan 29, 2019

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

C++ 107 10 Updated Apr 2, 2024
R 2 4 Updated Dec 6, 2016

Molecular Signatures Database (MSigDB) in a data frame

HTML 22 6 Updated Apr 1, 2024

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

C++ 115 39 Updated Jun 21, 2024

Truly parallel gzip decompression

C++ 123 11 Updated Aug 20, 2019

Face-meltingly fast, thread-safe, marshalable, unionable, probability- and optimal-size-calculating Bloom filter in go

Go 27 5 Updated May 3, 2024

Paint genomes with taxa-specific k-mer probabilities

C++ 8 Updated Mar 20, 2018

🐧 一个 Linux 上超赞的应用,软件,工具以及其它资源的集中地。

1,106 130 Updated Jun 12, 2024

A cross-platform command-line tool for executing jobs in parallel

Go 2 Updated Jun 15, 2020

A collection of articles and videos to understand Golang internals.

1,106 60 Updated Mar 24, 2023

Hirbin repository

Python 5 Updated Oct 11, 2017

Declination of @matcornic Learn theme to Hugo

JavaScript 580 316 Updated May 27, 2022

Analysis of single cell RNA-seq data course

TeX 669 361 Updated Apr 11, 2022

Genetic Algorithms library written in Go / golang

Go 2 1 Updated Nov 4, 2016

Genetic Algorithms library written in Go / golang

Go 3 1 Updated Aug 7, 2018

A 'time'-like utility for Unix that measures peak memory usage

Python 2 4 Updated Dec 11, 2014

Performs BLAST on compressed proteomic data.

Go 5 1 Updated Jun 23, 2015
Python 6 Updated Aug 28, 2014
Python 3 2 Updated Apr 24, 2014

qt5 bindings for go

Lua 418 68 Updated Apr 1, 2017
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