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Issues list

mmseq2 with ncbi nr data base taxonamy issue
#856 opened Jun 27, 2024 by feixiang1209 updated Jul 10, 2024
4
Having issues to create a NR db with taxonomy info
#824 opened Mar 15, 2024 by ahof1704 updated Jul 8, 2024
6
mmseqs cluster cannot correctly handle sequences from different strands
#858 opened Jun 28, 2024 by alexzrren updated Jul 5, 2024
3
Error: Prefilter & Search step died with mmseqs 15.6f452 easy-cluster
#860 opened Jul 2, 2024 by Danderson123 updated Jul 4, 2024
2
Discrepancy between MMseqs search and MMseqs taxonomy
#859 opened Jul 1, 2024 by pbelmann updated Jul 1, 2024
mmseqs createtaxdb unexpectedly killed
#811 opened Feb 1, 2024 by charlesfoster updated Jul 1, 2024
1
Fasta entry 0 is invalid
#446 opened Apr 29, 2021 by Xacfran updated Jun 26, 2024
6
All vs All alignment of nucleotides
#854 opened Jun 25, 2024 by luisas updated Jun 26, 2024
4
Efficiency and Accuracy of MMseqs2 Search vs. ColabFold MMseqs2 Detailed Version
#853 opened Jun 24, 2024 by tpdmskim updated Jun 24, 2024
Why is mmseqs search (without prefiltering) much slower than blastn?
#852 opened Jun 21, 2024 by rmostowy updated Jun 21, 2024
mmseqs taxonomy based on GTDB + NR viruses + NR eukaryotes
#849 opened Jun 2, 2024 by pbelmann updated Jun 14, 2024
1
result2msa output change
#846 opened May 24, 2024 by Beigephage updated May 30, 2024
4
Mmseqs generates a PSSM file with a different sequence than the input sequence
#847 opened May 26, 2024 by etiur updated May 30, 2024
5
(Question) leverage mmseqs for clustering with defined number of clusters?
#801 opened Jan 17, 2024 by paoslaos updated May 29, 2024
2
SAM file formatting
#845 opened May 9, 2024 by Naturalist1986 updated May 23, 2024
7
Question: cluster update with linclust algorithm.
#630 opened Oct 25, 2022 by ChanyeongKim updated May 14, 2024
1
RAM Consumption
#808 opened Jan 29, 2024 by pbelmann updated May 9, 2024
2
.dbtype already exists error when clustering using profiles
#844 opened May 6, 2024 by schmittel updated May 6, 2024
1
Use MMSeqs to Output full MSA
#843 opened May 6, 2024 by d8vela updated May 6, 2024
1
MMseqs search not finding exact and close-exact hits
#842 opened May 3, 2024 by mcn3159 updated May 4, 2024
1
Error: Fasta entry is invalid in createdb
#763 opened Oct 12, 2023 by ncfrey updated May 3, 2024
11
Does input FASTA file have to be aligned?
#841 opened May 2, 2024 by laurien-0 updated May 2, 2024
2
mmseqs local runs considerably slower than mmseqs colabfold api regardless of optimizations
#658 opened Jan 18, 2023 by xeniorn updated May 2, 2024
21
Sequence Similarity Network Generation
#837 opened Apr 25, 2024 by AntoniaFeilden updated Apr 25, 2024
Trivial case of clustering one sequence is too slow
#835 opened Apr 23, 2024 by korneel-emweb updated Apr 23, 2024
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