DNA barcoding analysis pipeline
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Updated
Jul 20, 2023 - Python
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
DNA barcoding analysis pipeline
A collection of various biopython scripts.
Short scripts for fetching nucleotide (FASTA), SRA (fastq), protein/gene information and Publication records from NCBI database for Solanum_Hugassii. Scripts can be modified to extract information for other species too.
A collection of simple python tools for molecular biology and bioinformatics
GenBank DNA files parser with graphic user interface
Research project for the Breaker Lab
Currents scripts and pipeline used for counting GC3 on: 20 Lepidoptera species, 33 Hymenoptera species, 42 Diptera species and 15 Coleoptera species using ensemble DToL data
Small Long-read Assembler for Educational Purposes.
Run SEER with fewer headaches
Modeling the molecular dynamics of Barstar/Barnase protein complex in solution
Python code to retrieve isoforms from uniprot for Glyconnect.
A command-line implementation of the 3DPatch pipeline.
Basic epidemic simulator, written in Python 3.
Workflow for Ribosome profiling data start and stop codon analysis.
A Project of Bioinformatics. Analyse and Check the syntax of a GTF file
A stringMLST-based approach to gene calling and annotation