flashcard / quiz app for Bioinformatics that is available on Android
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Updated
Jan 16, 2023 - Java
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
flashcard / quiz app for Bioinformatics that is available on Android
DNA barcoding analysis pipeline
Supplementary information on the exploration of the CAZome and carbohydrate processing enzyme activities in soft rot Pectobacteriaceae
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
A collection of various biopython scripts.
Designed the architecture and developed bioinformatics websites to analyze and interpret DNA and protein sequences using HTML, CSS, JavaScript, Python and CGI.
Short scripts for fetching nucleotide (FASTA), SRA (fastq), protein/gene information and Publication records from NCBI database for Solanum_Hugassii. Scripts can be modified to extract information for other species too.
A collection of simple python tools for molecular biology and bioinformatics
GenBank DNA files parser with graphic user interface
Research project for the Breaker Lab
This repository contains the codes associated with the study "SARS-CoV-2 BW lineage, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations". The first version of this work appeared on Research Square in November 2022 as preprint: https://doi.org/10.21203/rs.3.rs-2285898/v1
My work on the Bioinformatics for Health Sciences Master in Universitat Pompeu Fabra.
This is the repo for details regarding analysis of a shotgun metagenomic dataset for partial completion of a microbial sequence analysis course at CSU.
Predict the biological function of a protein
Currents scripts and pipeline used for counting GC3 on: 20 Lepidoptera species, 33 Hymenoptera species, 42 Diptera species and 15 Coleoptera species using ensemble DToL data
A repository containing all the file projects that I have for the Bioinformatics 3 (COMP 4312b) course.
Small Long-read Assembler for Educational Purposes.
This repository contains all the code pertinent to our work "Genome-Wide Association Study in a Rat Model of Temperament Identifies Multiple Loci for Exploratory Locomotion and Anxiety-Like Traits." published in Frontiers in Genetics.