flashcard / quiz app for Bioinformatics that is available on Android
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Updated
Jan 16, 2023 - Java
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
flashcard / quiz app for Bioinformatics that is available on Android
DupFinder: A tools to detect the duplicated genes using Illumina and Nanopore sequencing data
DNA barcoding analysis pipeline
Supplementary information on the exploration of the CAZome and carbohydrate processing enzyme activities in soft rot Pectobacteriaceae
Bioinformatics algorithms are computational tools used to analyze and interpret biological data, such as DNA or protein sequences, to understand biological processes and systems.
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
Unraveling Evolutionary Relationship between Fungi Species
A collection of various biopython scripts.
Designed the architecture and developed bioinformatics websites to analyze and interpret DNA and protein sequences using HTML, CSS, JavaScript, Python and CGI.
Short scripts for fetching nucleotide (FASTA), SRA (fastq), protein/gene information and Publication records from NCBI database for Solanum_Hugassii. Scripts can be modified to extract information for other species too.
Automated Tool for Global Screening Array analysis
Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.
A collection of simple python tools for molecular biology and bioinformatics
Supplementary information for analyses reported in Hobbs et al. (2023), for presenting the software package `cazy_webscraper`
Research project for the Breaker Lab
This repository contains the codes associated with the study "SARS-CoV-2 BW lineage, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations". The first version of this work appeared on Research Square in November 2022 as preprint: https://doi.org/10.21203/rs.3.rs-2285898/v1
My work on the Bioinformatics for Health Sciences Master in Universitat Pompeu Fabra.
本项目是对论文"Efficient computation of all perfect repeats in genomic sequences of up to half a gigabyte, with a case study on the human genome"和"Space-Efficient Computation of Maximal and Supermaximal Repeats in Genome Sequences"的复现,主要功能是对输入序列中重复片段的寻找。