illumina
Here are 181 public repositories matching this topic...
Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).
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Dec 13, 2018
Automated mitochondrial genome assembly using SRA public data
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Dec 29, 2023 - Perl
generates reference matrix of average beta methylation values
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Jan 30, 2018 - Python
Analysis documentation for research into the variants associated with hyperparathyroidism. Illumina, germline, human, whole exome sequence (WES) data from the CCDHB.
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Mar 2, 2023 - Shell
Synthetically Engineered Wastewater sequence data for Assessing Genomic Entities
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Feb 26, 2024 - Python
bash scripts used in the analysis of Illumina sequence data
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Jun 13, 2019 - Shell
A repository containing general scripts that are useful within bioinformatics
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Mar 2, 2017 - Shell
A simple program to generate .vcf and plink format files from .idat files
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Apr 18, 2024 - Shell
Data analysis framework to automatically process, compare and analyze both 2nd generation and 3rd generation sequencing data from Illumina and ONT platforms.
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Jun 24, 2024 - Python
A pipeline to map and visualize in vitro acquired CRIPSR spacers from Illumina sequence data. McKitterick, A. C.; LeGault, K. N.; Angermeyer, A.; Alam, M.; Seed, K. D. Competition between mobile genetic elements drives optimization of a phage-encoded CRISPR-Cas system: insights from a natural arms race. Phil. Trans. R. Soc. B 2019, 374, 20180089…
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Sep 13, 2018 - Python
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
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Jun 24, 2023 - Scala
code getter for illumina, pacbio, oxford long reads alignments.
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May 2, 2024 - Shell
Perform basic QC on illumina data
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May 15, 2019 - Groovy
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