Qiita - A multi-omics databasing effort
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Updated
Jul 6, 2024 - Python
Qiita - A multi-omics databasing effort
topological data analysis of population-scale microbiomes
Analyses in R and Python Using curatedMetagenomicData
A Collection of Bioinformatics Projects
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Predictive model, utilizes several machine learning algorithms to predict patient disease status from abundance data
A python package to calculate the dysbiosis score in microbiome datasets
Automated retrieval of consistent geographical metadata for microbiome research!
A database for storing and analyzing omics data
A reference-free statistical approach to diversity-generating & mobile genetic element discovery
A python implementation of the decontam R package for ASV filtering.
Code to reproduce preprocessing analysis of IBD dataset from the Human Microbiome Project. This work will provide a walk through analysis tool for the scientific community with less technical knowledge on data science and machine learning.
MAPle provides three different modules for the analysis of paired-end short read metagenomic data
Microbiome Data Analysis
genome annotation analyzer for the microbiome analysis
process raw reads from ubiome
Convert the American Gut Microbiome Project phenotype .xml files into a single .csv file.
Tools for phylogenetic data analysis including visualization and cluster-computing support.
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