API for MRC-IEU OpenGWAS platform (https://gwas.mrcieu.ac.uk)
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Updated
Jul 3, 2024 - Python
API for MRC-IEU OpenGWAS platform (https://gwas.mrcieu.ac.uk)
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
A repo that contains miscellaneous Python/C++ modules/programs, a standalone Python module 'palos' by the yfish group (can be installed by pip).
Forward-time simulation in Python using fwdpp
An analysis and visualization platform for 'omics data
R code for reproducing analysis and figures of Pocillopora host-symbiont interactions along an extreme environmental gradient
vcfpp.h + htslib + Rcpp = fast VCF/BCF https://doi.org/10.1093/bioinformatics/btae049
Genotype Representation Graph Library
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Population Genomics Analysis for Plasmodium falciparum
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
A set of programs in Julia designed to efficiently simulate range expansions.
An open-source toolkit for large-scale genomic analysis
Computation and inference on exact solutions of coalescent distributions under diverse demographic scenarios.
Rapid population clustering with autoencoders
Forward population genetics simulation and numerical approximations for multilocus mainland-island and finite-island models
VCF2Dis: A new simple and efficient software to calculate p-distance matrix based Variant Call Format
LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
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