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Issues list

Parser for PHYLIP distance matrix files Enhancement From Redmine
#1724 opened Jul 5, 2018 by peterjc
1
3
MafIO should index files in bytes mode Bug
#1149 opened Apr 12, 2017 by benfulton
2
12
value-less qualifiers get an empty value in EMBL export Bug
#902 opened Jul 27, 2016 by satta
1
12
multiprocessing in consensus calculation
#1872 opened Dec 10, 2018 by DavidBSauer
1
3
Failing doctests in C code
#2350 opened Nov 20, 2019 by peterjc
1
8
Expand SeqUtils ProtParam module
#3523 opened Apr 6, 2021 by Caiofcas
1
2
Clarify status of MultipleSeqAlignment format method
#3627 opened Jun 15, 2021 by peterjc
1
5
PDBParser support for pdb.gz files Enhancement
#3498 opened Mar 9, 2021 by duerrsimon
1
@duerrsimon
15
HSExposure fails for GLY residue (missing N atom)
#3469 opened Jan 18, 2021 by dominiquesydow
1
5
Add parsing for .pepdigest files
#3623 opened Jun 13, 2021 by Caiofcas
1
7
Bio.PDB.PSEA should use a temporary directory to run the third-party tool Enhancement good first issue This should be an easy fix, suitable for beginners help wanted
#4031 opened Aug 11, 2022 by JoaoRodrigues
1
5
cannot import name '_unicodefun' from 'click'
#3893 opened Apr 1, 2022 by rob-miller
1
1
Fix PDBList access to servers other than RCSB Bug good first issue This should be an easy fix, suitable for beginners help wanted
#3987 opened Jul 18, 2022 by JoaoRodrigues
1
3
Extend PDBList obsolete handling to mmCIF and mmtf formats as well as assemblies Bug Enhancement good first issue This should be an easy fix, suitable for beginners help wanted
#3988 opened Jul 18, 2022 by JoaoRodrigues
1
1
PDB atom charges are not supported
#3856 opened Feb 9, 2022 by markf94
1
4
Bio.PDB.internal_coords.AtomKey.__init__ fails during class construction of Bio.PDB.internal_coords.IC_Chain
#3793 opened Nov 16, 2021 by bzoracler
1
2
SnapGene files with line breaks in feature qualifiers result in corrupted genbank files Bug
#3885 opened Mar 22, 2022 by biostu24
2
11
Support for Leon compressed fasta/fastq file formats
#3918 opened May 2, 2022 by jdvne
1
2
Broken reference in selected_child when copying a DisorderedAtom
#3896 opened Apr 6, 2022 by Bartvelp
1
@JoaoRodrigues
1
BUG: Phylo.parse(file,"newick") does not throw error if name invalidly contains whitespace
#4134 opened Oct 15, 2022 by corneliusroemer
1
2
Write PDB with mmCIF resseq and without icode
#4335 opened Jun 19, 2023 by EdwardTran121
1
1
Non-English months in PDB headers
#4449 opened Sep 19, 2023 by exs-gbartlett
1
1
NewickIO.write: Incorrect serialization of taxon names with single quotes - backslash escape rather than double single quote
#4536 opened Dec 13, 2023 by corneliusroemer
1
Medline parser does not link affiliations to authors
#4303 opened May 17, 2023 by Bodasaieswar
1
13
tree.prune incorrectly sets the branch length
#4460 opened Oct 18, 2023 by diljotgrewal
1
1
ProTip! Exclude everything labeled bug with -label:bug.