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Issues: scverse/scanpy

Rename master -> main
#2869 by ivirshup was closed Feb 23, 2024
Closed 4
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503 Open 1,207 Closed
503 Open 1,207 Closed
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Issues list

New plot function to draw the relations between 2 categorical adata.obs variables? Enhancement ✨
#2797 opened Jan 3, 2024 by hyjforesight
1
Seaborn version requirement inconsistency Bug 🐛
#2791 opened Dec 21, 2023 by yotamcons
3 tasks done
1
Scipy getnnz deprecation? Bug 🐛
#2773 opened Nov 30, 2023 by gjhuizing
3 tasks done
1
Plotting config files Area - Plotting 🌺 Enhancement ✨
#2767 opened Nov 27, 2023 by flying-sheep
Enhancement of Parameter Descriptions in MatrixPlot Class Documentation Enhancement ✨
#2766 opened Nov 26, 2023 by wassmi
NameError: name 'Axes' is not defined with matplotlib 3.8.1+ Area - Plotting 🌺 Bug 🐛 Help Wanted
#2747 opened Nov 10, 2023 by Zethson
2 of 3 tasks
@Zethson
Broken test: PCA solver “LOBPCG” can’t handle small test data Bug 🐛
#2744 opened Nov 10, 2023 by flying-sheep
2 of 3 tasks
Different outputs between heatmap plot and matrix expression values Needs info❔ More information needed Question
#2740 opened Nov 9, 2023 by barbareyex
2 of 3 tasks
1
Switch our doctest handing to pytest-doctestplus Area - Documentation 📒 Development Process 🚀 Enhancement ✨
#2729 opened Nov 3, 2023 by flying-sheep
2
Remove sc.external Area – API API design Area – External Dealing with external tools
#2717 opened Oct 26, 2023 by flying-sheep
16 tasks
change location of add_totals values for sc.pl.dotplot Enhancement ✨
#2712 opened Oct 25, 2023 by c-westhoven
1
Always add 'use_rep' for uns["neighbors"]["params"] Area - Dimensionality Reduction 🤏 Area - Metadata 📝 Enhancement ✨
#2736 opened Oct 24, 2023 by canergen
1
highly variable genes + batch_key --> reciprocal condition number error Bug 🐛
#2669 opened Sep 19, 2023 by iamsalil
2 of 3 tasks
3
Patching scanpy for xeus Enhancement ✨
#2667 opened Sep 17, 2023 by VPetukhov
3
Can't implicitly convert non-string objects to strings. Bug about tl.filter_rank_genes_groups and tl.rank_genes_groups Bug 🐛 Closing candidate Issue that can probably be closed Needs info❔ More information needed
#2666 opened Sep 17, 2023 by christophechu
3 tasks done
1
Zoomed out PAGA output Bug 🐛
#2665 opened Sep 13, 2023 by DrLucyMac
3 tasks done
When you enter a dictonary var.name in sc.pl.dotplot, it converts the size of the text to the right of the plot. Enhancement ✨
#2663 opened Sep 12, 2023 by byeongchangsim
Datashader as plotting backend Area - Plotting 🌺 Enhancement ✨
#2656 opened Sep 6, 2023 by grst
7
Improve ergonomics of image comparison fixture Area - Plotting 🌺 Development Process 🚀 Enhancement ✨
#2649 opened Sep 4, 2023 by flying-sheep
2 tasks
Ingest: ValueError: all input arrays must have the same shape Bug 🐛
#2635 opened Aug 22, 2023 by sarah-chapin
2 of 3 tasks
Potential error in scanpy.tl.rank_genes_groups? Bug 🐛
#2634 opened Aug 22, 2023 by pakiessling
3 tasks done
1
An advice for color palette in adata.uns Enhancement ✨
#2632 opened Aug 22, 2023 by CocoGzh
1
sc.external.pp.scrublet disables figure plot in jupyterlab Bug 🐛
#2627 opened Aug 20, 2023 by luoxun-xl
2 of 3 tasks
scanpy.external.pp.dca results still need normolize,scale,and log1p ? Closing candidate Issue that can probably be closed Question
#2626 opened Aug 19, 2023 by rdf1993
1
Customizing Dendrogram and Cluster Names Placement in sc.pl.matrixplot Enhancement ✨
#2625 opened Aug 18, 2023 by elhaam
ProTip! What’s not been updated in a month: updated:<2024-06-10.