Official code repository for GATK versions 4 and up

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

The Chemistry Development Kit

Java utilities for Bioinformatics

A powerful open source data warehouse system

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.

Global Biotic Interactions provides access to existing species interaction datasets

Bio4j abstract model and general entry point to the project

Our VM/Docker sharing infrastructure and management component

MOLGENIS - for scientific data: management, exploration, integration and analysis.

OWLTools

Mining CRISPRs in Environmental Datasets

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Annotation of VCF variants with functional impact and from databases (executable+library)

Various utilities regarding Levenshtein transducers. (Java)

sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java

Interpretation of proteomics identification results

an implementation of NSGA-II in java