Proteomics search & quantification so fast that it feels like magic
-
Updated
May 7, 2024 - Rust
Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.
Proteomics search & quantification so fast that it feels like magic
Randomly subsample sequencing reads or alignments
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
Bam Error Stats Tool (best): analysis of error types in aligned reads.
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
👷 Fasten toolkit, for streaming operations on fastq files
Yet Another Chimeric Read Detector
Compacted and colored de Bruijn graph construction and querying
Command line utility for manipulating Illumina-generated FASTQ files.
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
Rust implementation of a fast, easy, interval tree library nim-lapper
Rust bindings to minimap2 library