Official code repository for GATK versions 4 and up
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Updated
Jun 29, 2024 - Java
Official code repository for GATK versions 4 and up
Java utilities for Bioinformatics
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
A reference guided assembler of highly variable viral genomes
The mitochondrial workbench
A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon data
sparkhit - analyzing large scale genomic data on the cloud
Big Data tool for scalable short-read error correction
MiTools: yet another Next Generation Sequencing (NGS) data processing tool (based on MiLib)
A Reliable and Fast Algorithm for Single Individual Haplotyping
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