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Pull requests: sourmash-bio/sourmash

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Pull requests list

EXP: work with RankLineageInfo and sourmash tax
#2603 opened May 2, 2023 by ctb Loading…
1 of 4 tasks
3 ❤️ 1
[WIP] Updating developer information with docs building instructions
#1582 opened Jun 11, 2021 by mr-eyes Loading…
12
[WIP] JSON schema 4.0 issues to address for a 4.0 release
#578 opened Dec 14, 2018 by luizirber Loading…
7 tasks
pre-4.0
3
[EXP] C++ header using C API (generated from Rust) rust
#661 opened Mar 29, 2019 by luizirber Loading…
5 tasks done
2
[MRG] Updating citation and codemeta 4.0 issues to address for a 4.0 release
#837 opened Jan 9, 2020 by luizirber Loading…
1 of 14 tasks
4.0
7
[WIP] Improve signature save docstring; switch docstrings over to markdown
#921 opened Mar 28, 2020 by ctb Loading…
5 tasks done
2
add DNA/protein check on first 100 bp of FASTA files
#1037 opened Jun 21, 2020 by ctb Loading…
5 tasks
1
[WIP] Ertl estimators for scaled minhash
#1270 opened Jan 6, 2021 by luizirber Loading…
7 tasks
1
[WIP] Truncate notification messages in more places
#1342 opened Feb 20, 2021 by ctb Loading…
5 tasks
1
3
[EXP] Build a storage plugin interface.
#1368 opened Mar 5, 2021 by ctb Loading…
5 tasks
1
[WIP] Fix MinHash merge of abund + noabund objects (rust). rust
#1395 opened Mar 14, 2021 by ctb Loading…
5 tasks
[WIP] Sphinx Panels
#1500 opened May 5, 2021 by josesanchez1815 Loading…
10
[EXP] explore alternative MinHash constructors, and other things.
#1510 opened May 10, 2021 by ctb Loading…
2
Added jupyter notebooks
#36 opened Aug 23, 2016 by anmwinter Loading…
5 tasks
[WIP] Adding some docstrings
#1583 opened Jun 11, 2021 by hehouts Loading…
1
[WIP] Start documenting the Rust API
#1584 opened Jun 12, 2021 by luizirber Loading…
1
[MRG] Add a function to plot the taxonomy output
#1607 opened Jun 18, 2021 by taylorreiter Loading…
4
[EXP] Lazy signature loading classes that use manifests
#1619 opened Jun 21, 2021 by ctb Loading…
2
[EXP] a simple JSON RPC client for sourmash search
#1644 opened Jun 27, 2021 by ctb Loading…
1
[EXP] Implement kmers_and_hashes in Rust
#1698 opened Aug 2, 2021 by mr-eyes Loading…
2
[pre-commit.ci] pre-commit autoupdate
#3238 opened Jul 1, 2024 by pre-commit-ci bot Loading…
1
[EXP] add an Index class that loads directly from a screed-loadable file
#1783 opened Jan 6, 2022 by ctb Loading…
1
[EXP] try out making a cover for the prefetch results
#1853 opened Feb 26, 2022 by ctb Loading…
1
[WIP] add lca convert command
#2000 opened Apr 26, 2022 by ctb Loading…
1
4
[EXP] use codon degeneracy to properly translate edge amino acids if possible
#1579 opened Jun 10, 2021 by bluegenes Loading…
1
ProTip! Exclude everything labeled bug with -label:bug.