🌱📦 A collection of bioinformatics tools for working with sequence data.
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Updated
Jul 1, 2024 - Shell
🌱📦 A collection of bioinformatics tools for working with sequence data.
Strand-Seq Quality Control Pipeline based on ashleys-qc
Data intensive science for everyone.
UGENE is free open-source cross-platform bioinformatics software
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
Official code repository for GATK versions 4 and up
A minimal and human-readable language and environment for the live coding of algorithmic electronic music.
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Infectious Disease Sequencing Platform
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
provides common tools and lookup tables used primarily by the hgvs and uta packages
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
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