[go: nahoru, domu]
Skip to content

Issues: scverse/scanpy

Rename master -> main
#2869 by ivirshup was closed Feb 23, 2024
Closed 4
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

504 Open 1,214 Closed
504 Open 1,214 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

"sc.pl.spatial()" function drawing cannot display sliced background.
#2489 opened May 17, 2023 by sunjiahe-hub
Tile Multiple FOVs sc.pl.spatial
#2486 opened May 12, 2023 by Wing-kin-chan
1 task
Filtering spots based on coordinates
#2481 opened May 3, 2023 by jnmark
1
sc.pl.umap not properly handling Matplotlib ax object
#2477 opened Apr 27, 2023 by jolespin
2 of 3 tasks
Allow scanpy.tl.pca to accept a layer argument
#2476 opened Apr 27, 2023 by jolespin
1 of 5 tasks
Custom transformation API (variant of scanpy.pp.normalize_total such as scanpy.pp.normalize)
#2475 opened Apr 27, 2023 by jolespin
1 of 5 tasks
ArpackError in sc.tl.pca
#2473 opened Apr 25, 2023 by gwosd
plot tSNE stratified by conditions in separate plots
#2464 opened Apr 11, 2023 by Minoo-ASTY
Precomputed distance matrices
#2453 opened Mar 22, 2023 by stanleyjs
1 of 5 tasks
Diagonal of connectivities for diffusion maps is zero - is this intended?
#2451 opened Mar 12, 2023 by InfProbSciX
[Proposal] Integrate Marsilea to visualize AnnData Area - Plotting 🌺 Enhancement ✨
#2444 opened Mar 9, 2023 by Mr-Milk
2 tasks done
2.0.0
5
Regress_out function sets means of genes to zero
#2442 opened Mar 9, 2023 by VivianeSchulz
1
scipy.spatial.sKDTree does not have a keyword argument 'n_jobs'
#2436 opened Mar 5, 2023 by yjkweon24
1 task
4
Computes a hierarchical clustering for the variables(genes)
#2433 opened Feb 28, 2023 by SNOL2
1 task
ImplicitModificationWarning: Trying to modify attribute ._uns of view, initializing view as actual. self.data[key] = value
#2428 opened Feb 22, 2023 by navi889
2 of 3 tasks
1
feat(docs): tag scanpy versions on readthedocs
#2425 opened Feb 21, 2023 by aryarm 1.11.0
4
Tools dendogram fails when using categorical obs key where not all categories have values
#2418 opened Feb 15, 2023 by yotamcons
2 of 3 tasks
1
Documentation inconsistencies and mistakes - tools / embeddings / tsne, phate, umap
#2408 opened Feb 8, 2023 by yotamcons
3 tasks done
1
TypeError: cannot pickle 'weakref' object
#2406 opened Feb 6, 2023 by brianpenghe
Is there a way to export UMAP data as a UMAP class?
#2403 opened Jan 26, 2023 by jfjordanfarr
Plotting UMAP in backed mode leads to error when setting color palettes
#2401 opened Jan 20, 2023 by Hrovatin
2 tasks
sc.pp.filter_cells does not work for pseudo counts data
#2399 opened Jan 17, 2023 by HelloWorldLTY
scRNA-seq CRISPR data: sc.read_10x_h5 does not include guide sequence in the count matrix and .var Area - IO Reading and writing
#2398 opened Jan 12, 2023 by kchl5
5
scanpy.tl.umap should have a key_added parameter
#2394 opened Jan 8, 2023 by alexlenail
1
Multithreading for scanpy.tl.rank_genes_group? Area – Differential Expression Differential expression Enhancement ✨
#2390 opened Dec 29, 2022 by evanbiederstedt
1 task done
4
ProTip! Add no:assignee to see everything that’s not assigned.